The 5-Cy5 modification incorporates a fluorescent Cy™ 5 dye at the 5' terminus of an oligonucleotide. 5' Cy5 modified oligonucleotides can be used in a wide array of applications including dual-labeled fluorogenic probes for real-time PCR. This non-sulfonated cyanine based dye is water soluble and bright, fluorescing in the far-red region of the visible spectrum, and can be effectively quenched by BHQ®-2 dye. Quasar® 670 can be used as a direct replacement for the Cy 5 dye.
Properties:
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Formula:
C31H38N2O5P
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Molecular Weight:
549.62
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Absorption Maximum (Lambda Max):
646
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Extinction Coefficient at Lambda max:
250000
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Extinction Coefficient at 260 nm:
10000
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Fluorescence Maximum:
662
Product usage:
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The mass this product adds after conjugation and work-up (the additional mass seen by mass spectrometry) is:
533.62